PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016460963.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 1245aa    MW: 136280 Da    PI: 4.5901
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016460963.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.79e-05411432223
                     EETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                      C +C+ +F++k++L +H+ +H
  XP_016460963.1 411 HCDKCNVTFNDKDDLLQHQLSH 432
                     5******************999 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098210.287282355IPR001739Methyl-CpG DNA binding
PfamPF014296.3E-5290335IPR001739Methyl-CpG DNA binding
SuperFamilySSF541718.5E-8290334IPR016177DNA-binding domain
SMARTSM003550.0064410432IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.346410437IPR007087Zinc finger, C2H2
SuperFamilySSF576671.46E-5411476No hitNo description
PROSITE patternPS000280412432IPR007087Zinc finger, C2H2
SMARTSM003551.1454476IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.203454481IPR007087Zinc finger, C2H2
PROSITE patternPS000280456476IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1245 aa     Download sequence    Send to blast
MASVTVDSSS VTVTDGPLHA ESIPTVDLRL LSQSELYSLS LCTPSAFNPR RDDDVIVPKI  60
DRSVFNESAG SRKQTYSRLR LAPASSSSSS ALRSRTPHLR NSLHNPSSFN NDPENSQIVS  120
LLKQLFGSGT KTNPNPSDLI HIRVDYSDSL SVPLPLTVRV PESSNVGSIG QKRKRGRPRK  180
NENENEKVGV GGGGGGVDKG TDVAIKDIVV YQNVDDNRDR DDKEMLNKDG EPVDLAVLGT  240
LEDPFGEELR RRTEGLGSSE ELLRFLGRLN GQWGSTRKKR RIVDAGEFGN VLPKGWKLLL  300
SIKRKEGRVW LHCRRYISPS GRQFETCKEV SSYLLFLHGE RNENLPTYAK SSGTVEITNT  360
CALVSTSDLQ DGSNNEGPLF HNSSPAVDHG ELQVLLNFGE LSEVQVGDLL HCDKCNVTFN  420
DKDDLLQHQL SHRRRRSRNG QSITDGVIIK DGKFECQFCH KTFEERHRYN GHVGAHVKNQ  480
VKTADGSVSV NAGEFVEPVA SSGAMLRESM MLDSVVSLRN LSEIADVSAD YGRKFAPPGK  540
IQEDDHMEID DKLEGLSEAL NTAPNKTNMC LSSEAITCNN MGSIYCETPC DSLIADVVAE  600
GTNKGCHNQE GNSESCSPIS LNEQTCVNTS KVIDCSTIEE PEQEGLLCSN GIVDSCGVSV  660
EDGKFSPAVE ESKVESDRFV DNESTTALCS NVSVLDENSL TNAKQVPCTE DHSGKNIDVL  720
NRVPFWAETS KENRGLSSTG TPSCDEEGST VDYVKRVFPG CIGEQKPSSM MCNIENDECG  780
SLVDSNDNKL IMKEDSCSFV PHPDKHVNTA EKDVSDGSAC FLEEPEQQKV DKNGLFSSAC  840
DKNSEVEAQL LNDSKTTTDE PKVSELQGVS SNITGFPCNN HAVQKADTSD IEKEKSLAFC  900
SLFPAMNLRA PCAEDHDTKV YRSTIEVNDQ QRAANTLFSS TNVPEASTKE NTMNRSYNNP  960
LNGSKFDGLE NSRHHDLNVV FGNSHVDLDA NLNCTTFQLG MEETYGVQAN LLGRLESDKQ  1020
GEVGIDLSDS AFKGKTGDFE SNFDTVFHSQ LWDEQKVDEV GDSGKKIITG FGCGGAKPNE  1080
DVMAGSIWRT GVENVMQGDS ADNSTSVVQS SNCFQTYDVL SDKVQSLFGE NEKYDGNTGF  1140
DGLRSDRTGP VEYSFMSTQS LNSLQEEPRA LPYDVDIEQG FNSSFWLGKD DLMPNLAGRN  1200
QVMLVCVWCR NEFYQEPNQL GAEAGSIGSM CPTCSGRISG QFSFL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016460963.10.0PREDICTED: uncharacterized protein LOC107784349
TrEMBLM1A7M70.0M1A7M7_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000164250.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA78501619